Publications

2025

Visualizing and deciphering influenza A(H1N1) pdm09 reassortment in the 2019-23 seasons

2025 Corresponding Author

Virus Evolution · 2025

Visualizing and deciphering influenza A(H1N1) pdm09 reassortment in the 2019-23 seasons

Tai-Jung Li, Kuan-Fu Chen, Andrew Pekosz, Yu-Nong Gong (2025). Virus Evolution 11(1), veaf070.

Genomic surveillance of SARS-CoV-2 in Taiwan: A perspective on evolutionary data interpretation and sequencing issues

2025 First Author

Biomedical Journal · 2025

Genomic surveillance of SARS-CoV-2 in Taiwan: A perspective on evolutionary data interpretation and sequencing issues

Yu-Nong Gong, Nai-Yu Kuo, Ting-Syuan Yeh, Shin-Ru Shih, Guang-Wu Chen (2025). Biomedical Journal. 48(4), 100820.

2024

Corrigendum to 'Inferring the global phylodynamics of influenza A/H3N2 viruses in Taiwan' [J Formos Med Assoc 118 (2019) 116-124].

2024 First Author

Journal of the Formosan Medical Association = Taiwan yi zhi · 2024

Corrigendum to 'Inferring the global phylodynamics of influenza A/H3N2 viruses in Taiwan' [J Formos Med Assoc 118 (2019) 116-124].

Gong YN, Tsao KC, Chen GW (2024). Journal of the Formosan Medical Association = Taiwan yi zhi.

Novel intertypic recombination of Echovirus 11 in the Enterovirus species B.

2024 First Author

Journal of medical virology · 2024

Novel intertypic recombination of Echovirus 11 in the Enterovirus species B.

Gong YN, Yang SL, Chen YC, Liu YC, Huang YC, Tsao KC (2024). Journal of medical virology.

2023

Emergence and Persistent Dominance of SARS-CoV-2 Omicron BA.2.3.7 Variant, Taiwan

2023 Co-First Authors*

Emerging Infectious Diseases · 2023

Emergence and Persistent Dominance of SARS-CoV-2 Omicron BA.2.3.7 Variant, Taiwan

Pei-Lan Shao*, Hsiao-Chen Tu*, Yu-Nong Gong*, Hung-Yu Shu, Ralph Kirby, Li-Yun Hsu, Hui-Yee Yeo, Han-Yueh Kuo, Yi-Chia Huang, Yung-Feng Lin, Hui-Ying Weng, Yueh-Lin Wu, Chien-Chih Chen, Tzen-Wen Chen, Kuo-Ming Lee,...

2022

Quantifying Neutralizing Antibodies in Patients with COVID-19 by a Two-Variable Generalized Additive Model.

2022 Co-First Author

mSphere · 2022

Quantifying Neutralizing Antibodies in Patients with COVID-19 by a Two-Variable Generalized Additive Model.

Liu KT, Gong YN, Huang CG, Huang PN, Yu KY, Lee HC, Lee SC, Chiang HJ, Kung YA, Lin YT, Hsiao MJ, Huang PW, Huang SY, Wu HT, Wu CC,...

Evolution and Epidemiology of SARS-CoV-2 Virus.

2022 First Author

Methods in molecular biology (Clifton, N.J.) · 2022

Evolution and Epidemiology of SARS-CoV-2 Virus.

Gong YN, Lee KM, Shih SR (2022). Methods in molecular biology (Clifton, N.J.).

2020

SARS-CoV-2 genomic surveillance in Taiwan revealed novel ORF8-deletion mutant and clade possibly associated with infections in Middle East.

2020 First Author

Emerging microbes & infections · 2020

SARS-CoV-2 genomic surveillance in Taiwan revealed novel ORF8-deletion mutant and clade possibly associated with infections in Middle East.

Gong YN, Tsao KC, Hsiao MJ, Huang CG, Huang PN, Huang PW, Lee KM, Liu YC, Yang SL, Kuo RL, Chen KF, Liu YC, Huang SY, Huang HI, Liu MT,...

2019

Population dynamics at neuraminidase position 151 of influenza A (H1N1)pdm09 virus in clinical specimens.

2019 First Author

The Journal of general virology · 2019

Population dynamics at neuraminidase position 151 of influenza A (H1N1)pdm09 virus in clinical specimens.

Gong YN, Tsao KC, Chen GW, Wu CJ, Chen YH, Liu YC, Yang SL, Huang YC, Shih SR (2019). The Journal of general virology.

Inferring the global phylodynamics of influenza A/H3N2 viruses in Taiwan.

2019 First Author

Journal of the Formosan Medical Association = Taiwan yi zhi · 2019

Inferring the global phylodynamics of influenza A/H3N2 viruses in Taiwan.

Gong YN, Tsao KC, Chen GW (2019). Journal of the Formosan Medical Association = Taiwan yi zhi.

2018

Clinical characteristics of patients with laboratory-confirmed influenza A(H1N1)pdm09 during the 2013/2014 and 2015/2016 clade 6B/6B.1/6B.2-predominant outbreaks.

2018 Last/Corresponding Author

Scientific reports · 2018

Clinical characteristics of patients with laboratory-confirmed influenza A(H1N1)pdm09 during the 2013/2014 and 2015/2016 clade 6B/6B.1/6B.2-predominant outbreaks.

Hsieh YC, Tsao KC, Huang CT, Chang KY, Huang YC, Gong YN (2018). Scientific reports.

Centennial review of influenza in Taiwan.

2018 First Author

Biomedical journal · 2018

Centennial review of influenza in Taiwan.

Gong YN, Kuo RL, Chen GW, Shih SR (2018). Biomedical journal.

2017

Erratum to: A metagenomics study for the identification of respiratory viruses in mixed clinical specimens: an application of the iterative mapping approach.

2017 First Author

Archives of virology · 2017

Erratum to: A metagenomics study for the identification of respiratory viruses in mixed clinical specimens: an application of the iterative mapping approach.

Gong YN, Yang SL, Chen GW, Chen YW, Huang YC, Ning HC, Tsao KC (2017). Archives of virology.

2016

A Next-Generation Sequencing Data Analysis Pipeline for Detecting Unknown Pathogens from Mixed Clinical Samples and Revealing Their Genetic Diversity.

2016 First Author

PloS one · 2016

A Next-Generation Sequencing Data Analysis Pipeline for Detecting Unknown Pathogens from Mixed Clinical Samples and Revealing Their Genetic Diversity.

Gong YN, Chen GW, Yang SL, Lee CJ, Shih SR, Tsao KC (2016). PloS one.

Molecular evolution and the global reemergence of enterovirus D68 by genome-wide analysis.

2016 First Author

Medicine · 2016

Molecular evolution and the global reemergence of enterovirus D68 by genome-wide analysis.

Gong YN, Yang SL, Shih SR, Huang YC, Chang PY, Huang CG, Kao KC, Hu HC, Liu YC, Tsao KC (2016). Medicine.

2014

Computational analysis and mapping of novel open reading frames in influenza A viruses.

2014 First Author

PloS one · 2014

Computational analysis and mapping of novel open reading frames in influenza A viruses.

Gong YN, Chen GW, Chen CJ, Kuo RL, Shih SR (2014). PloS one.

2012

2012 First Author

Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi · 2012

Characterization of subtypes of the influenza A hemagglutinin (HA) gene using profile hidden Markov models.

Gong YN, Chen GW, Shih SR (2012). Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi.

A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses.

2012 First Author

Computational biology and chemistry · 2012

A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses.

Gong YN, Chen GW, Suchard MA (2012). Computational biology and chemistry.